Abstract

The inter-areal wiring pattern of mouse cerebral cortex was analyzed in relation to an accurate parcellation of cortical areas. Twenty-seven retrograde tracer injections were made in 19 areas of a 41 area (plus 7 sub-area) parcellation of the mouse neo-, parahippocampal and perirhinal cortex. Flat mounts of the cortex and multiple histological markers enabled detailed counts of labeled neurons in individual areas. A weight index was determined for each area-to-area pathway based on the Fraction of Extrinsically Labeled Neurons (FLNe). Data analysis allowed cross species comparison with the macaque. Estimation of FLNe statistical variability based on repeat injections revealed high consistency across individuals and justifies using a single injection per area to characterize connectivity. The observed lognormal distribution of connections to each cortical area spanned 5 orders of magnitude and revealed a distinct connectivity profile for each area, analogous to that observed in macaque. The resulting graph has a density of 97% (i.e. 97% of connections that can exist do exist), considerably higher than the 66% density reported for the macaque. Our results provide more sharply defined connectivity profiles and a markedly higher graph density than shown in a recent probabilistic mouse connectome.