SARS-CoV-2 evolution during treatment of chronic infection

Rawlings Datir,Isabella Ferreira,Salma Gayed,Aminu Jahun,Myra Hosmillo,Chloe Rees-Spear,Petra Korlević,Ines Lumb,David Roberts,Anita Chandra,Nigel Temperton,Stephen Baker,Gordon Dougan,Christoph Hess,Nathalie Kingston,Paul Lehner,Paul Lyons,Nicholas Matheson,Willem Owehand,Caroline Saunders,Charlotte Summers,James Thaventhiran,Mark Toshner,Michael Weekes,Ashlea Bucke,Jo Calder,Laura Canna,Jason Domingo,Anne Elmer,Stewart Fuller,Julie Harris,Sarah Hewitt,Jane Kennet,Sherly Jose,Jenny Kourampa,Anne Meadows,Criona O’Brien,Jane Price,Cherry Publico,Rebecca Rastall,Carla Ribeiro,Jane Rowlands,Valentina Ruffolo,Hugo Tordesillas,Ben Bullman,Benjamin Dunmore,Stuart Fawke,Stefan Graf,Josh Hodgson,Christopher Huang,Kelvin Hunter,Emma Jones,Ekaterina Legchenko,Cecilia Matara,Jennifer Martin,Federica Mescia,Ciara O’Donnell,Linda Pointon,Nicole Pond,Joy Shih,Rachel Sutcliffe,Tobias Tilly,Carmen Treacy,Zhen Tong,Jennifer Wood,Marta Wylot,Laura Bergamaschi,Ariana Betancourt,Georgie Bower,Chiara Cossetti,Aloka De,Madeline Epping,Nicholas Gleadall,Richard Grenfell,Andrew Hinch,Oisín Huhn,Sarah Jackson,Isobel Jarvis,D. Lewis,Joe Marsden,Francesca Nice,Georgina Okecha,Ommar Omarjee,Marianne Perera,Nathan Richoz,Veronika Romashova,Natalia Yarkoni,Rahul Sharma,Luca Stefanucci,Jonathan Stephens,Mateusz Strezlecki,Lori Turner,Eckart Bie,Katherine Bunclark,Maša Josipović,Michael Mackay,Sabrina Rossi,Mayurun Selvan,Sarah Spencer,Cissy Yong,Ali Ansaripour,Alice Michael,Lucy Mwaura,Caroline Patterson,Gary Polwarth,Petra Polgarova,Giovanni Stefano,Codie Fahey,Rachel Michel,Sze-How Bong,Jérôme Coudert,Elaine Holmes,John Allison,Helen Butcher,Daniela Caputo,Debbie Clapham-Riley,Eleanor Dewhurst,Anita Furlong,Barbara Graves,Jennifer Gray,Tasmin Ivers,Mary Kasanicki,Emma Gresley,Rachel Linger,Sarah Meloy,Francesca Muldoon,Nigel Ovington,Sofia Papadia,Isabel Phelan,Hannah Stark,Kathleen Stirrups,Paul Townsend,Neil Walker,Jennifer Webster,Samuel Robson,Nicholas Loman,Thomas Connor,Tanya Golubchik,Rocio Nunez,Catherine Ludden,Sally Corden,Ian Johnston,David Bonsall,Colin Smith,Ali Awan,Giselda Bucca,M. Török,Kordo Saeed,J. Prieto,David Jackson,William Hamilton,Luke Snell,Catherine Moore,Elaine Harrison,Sónia Gonçalves,Derek Fairley,Matthew Loose,Joanne Watkins,Rich Livett,Samuel Moses,Elias Allara,Sam Nicholls,Matthew Bull,Darren Smith,Jeff Barrett,David Aanensen,Martin Curran,David Partridge,Dinesh Aggarwal,James Shepherd,Matthew Parker,Sharon Glaysher,Matthew Bashton,Anthony Underwood,Nicole Pacchiarini,Stavroula Louka,Alessandro Carabelli,Kate Templeton,Cordelia Langford,John Sillitoe,Thushan Silva,Dennis Wang,Dominic Kwiatkowski,Andrew Rambaut,Justin O’Grady,Simon Cottrell,Matthew Holden,Emma Thomson,Husam Osman,Monique Andersson,Anoop Chauhan,Mohammed Hassan-Ibrahim,Mara Lawniczak,Alex Alderton,Meera Chand,Chrystala Constantinidou,Meera Unnikrishnan,Alistair Darby,Julian Hiscox,Steve Paterson,Arun Mahesh,David Robertson,Erik Volz,Andrew Nelson,Oliver Pybus,Cristina Ariani,Michael Chapman,Kathy Li,Rajiv Shah,Natasha Jesudason,Yusri Taha,M. McHugh,Rebecca Dewar,Claire McMurray,Sarojini Pandey,James McKenna,Gregory Young,Clare McCann,Scott Elliott,Hannah Lowe,Ben Temperton,Sunando Roy,Anna May,Sara Rey,Matthew Kiernan,Stefan Rooke,Sharif Shaaban,Mariateresa Cesare,Laura Letchford,Siona Silveira,Emanuela Pelosi,Eleri Wilson-Davies,Áine O’Toole,John Henderson,Richard Stark,Louis Plessis,Chris Ruis,Helen Adams,Yann Bourgeois,Stephen Michell,Dimitris Grammatopoulos,Jonathan Edgeworth,Judith Breuer,John Todd,Christophe Fraser,David Buck,Michaela John,Gemma Kay,Steve Palmer,Sharon Peacock,David Heyburn,Danni Weldon,Esther Robinson,Alan McNally,Peter Muir,Ian Vipond,John Boyes,Venkat Sivaprakasam,Tranprit Salluja,Samir Dervisevic,Emma Meader,Naomi Park,Karen Oliver,Aaron Jeffries,Sascha Ott,Ana Filipe,David Simpson,Chris Williams,Jane Masoli,Bridget Knight,Christopher Jones,Cherian Koshy,Amy Ash,Andrew Bosworth,Liz Ratcliffe,Li Xu-McCrae,Hannah Pymont,Stephanie Hutchings,Lisa Berry,Katie Jones,Fenella Halstead,Thomas Davis,Christopher Holmes,Miren Iturriza‐Gómara,Anita Lucaci,Paul Randell,Alison Cox,Pinglawathee Madona,Kathryn Harris,Julianne Brown,Tabitha Mahungu,Dianne Irish-Tavares,Tanzina Haque,Jennifer Hart,Eric Witele,Melisa Fenton,Steven Liggett,Clive Graham,Emma Swindells,Jennifer Collins,Gary Eltringham,Sharon Campbell,C. McClure,Gemma Clark,Tim Spector,Carl Jones,Jessica Lynch,Ben Warne,Steven Leonard,Jillian Durham,Thomas Williams,Sam Haldenby,Nathaniel Storey,Nabil-Fareed Alikhan,Nadine Holmes,Christopher Moore,Matthew Carlile,Malte Pinckert,Noel Craine,Ronan Lyons,Angela Beckett,Salman Goudarzi,Christopher Fearn,Kate Cook,Hannah Dent,Hannah Paul,R. Davies,Beth Blane,Sophia Girgis,Mathew Beale,Katherine Bellis,Matthew Dorman,Eleanor Drury,Leanne Kane,Sally Kay,Samantha McGuigan,Rachel Nelson,Hilary Ranson,Rahul Batra,Rachel Williams,Mark Kristiansen,Angie Green,Anita Justice,Adhyana Mahanama,Buddhini Samaraweera,Nazreen Hadjirin,Joshua Quick,Radoslaw Poplawski,Leanne Kermack,Nicola Reynolds,Grant Hall,Yasmin Chaudhry,Iliana Georgana,Robin Moll,Alicia Thornton,Richard Myers,Joanne Stockton,Charlotte Williams,Wen Yew,Alexander Trotter,Amy Trebes,George MacIntyre-Cockett,Alec Birchley,Alexander Adams,Amy Plimmer,Bree Gatica-Wilcox,Caoimhe McKerr,Ember Hilvers,Hannah Jones,Hibo Asad,Jason Coombes,Johnathan Evans,Laia Fina,Lauren Gilbert,Lee Graham,Michelle Cronin,Sara Kumziene-Summerhayes,Sarah Taylor,Sophie Jones,Danielle Groves,Peijun Zhang,Marta Gallis,Igor Starinskij,Christopher Jackson,Marina Gourtovaia,Gerry Tonkin‐Hill,Kevin Lewis,Jaime Tovar-Corona,Keith James,Laura Baxter,Mohammad Alam,Richard Orton,Joseph Hughes,Vattipally Sreenu,Manon Ragonnet‐Cronin,Fabrícia Nascimento,David Jorgensen,Lily Geidelberg,Alex Zarebski,Jayna Raghwani,Moritz Kraemer,Joel Southgate,Benjamin Lindsey,Jon-Paul Keatley,Joshua Singer,Leonardo Martins,Corin Yeats,Khalil Abudahab,Ben Taylor,Mirko Menegazzo,John Danesh,Wendy Hogsden,Sahar Eldirdiri,Anita Kenyon,J. Mason,Trevor Robinson,Alison Holmes,James Price,John Hartley,Tanya Curran,Alison Mather,Giri Shankar,Rachel Jones,Laurence Moore,Sian Morgan,Elizabeth Wastenge,Siddharth Mookerjee,Rachael Stanley,Wendy Smith,Tim Peto,David Eyre,Derrick Crook,Gabrielle Vernet,Christina Ramirez,Huw Gulliver,Ian Merrick,Martyn Guest,Robert Munn,Declan Bradley,Tim Wyatt,Charlotte Beaver,Luke Foulser,Sophie Palmer,Carol Churcher,Ellena Brooks,Katerina Galai,Georgina McManus,Frances Bolt,Francesc Coll,Lizzie Meadows,Stephen Attwood,Alisha Davies,Elen Lacy,Sue Edwards,Garry Scarlett,Sarah Jeremiah,Danielle Leek,Sushmita Sridhar,Stephen Forrest,Claire Cormie,Harmeet Gill,Joana Dias,Ellen Higginson,Mailis Maes,Jamie Young,Michelle Wantoch,Dorota Jamrozy,Stephanie Lo,Minal Patel,Verity Hill,Claire Bewshea,Sian Ellard,Cressida Auckland,Ian Harrison,Chloe Bishop,Vicki Chalker,Alex Richter,Andrew Beggs,Angus Best,Benita Percival,Jeremy Mirza,Oliver Megram,Patrick Maxwell,Liam Crawford,Fiona Ashcroft,Emma Moles-Garcia,Nicola Cumley,Richard Hopes,Patawee Asamaphan,Marc Niebel,Rory Gunson,Amanda Bradley,Alasdair Maclean,Guy Mollett,Rachel Blacow,Paul Bird,Thomas Helmer,Karlie Fallon,Julian Tang,Antony Hale,Louissa Macfarlane-Smith,Katherine Harper,Holli Carden,Nicholas Machin,Kathryn Jackson,Shazaad Ahmad,Lance Turtle,Elaine O’Toole,Joanne Watts,Cassie Breen,Angela Cowell,Adela Alcolea-Medina,Themoula Charalampous,Amita Patel,Lisa Levett,Judith Heaney,Aileen Rowan,Graham Taylor,Divya Shah,Laura Atkinson,Jack Lee,Adam Westhorpe,Riaz Jannoo,Helen Lowe,Angeliki Karamani,Leah Ensell,Wendy Chatterton,Monika Pusok,Ashok Dadrah,Amanda Symmonds,Graciela Sluga,Zoltán Molnár,Paul Baker,Stephen Bonner,Sarah Essex,Edward Barton,Debra Padgett,Garren Scott,Jane Greenaway,Brendan Payne,Shirelle Burton-Fanning,Sheila Waugh,Veena Raviprakash,Nicola Sheriff,Victoria Blakey,Lesley-Anne Williams,Jonathan Moore,Susanne Stonehouse,Louise Smith,Rose Davidson,Luke Bedford,Lindsay Coupland,Victoria Wright,Joseph Chappell,Theocharis Tsoleridis,Jonathan Ball,Manjinder Khakh,Flavia Flaviani,Michelle Lister,Hannah Howson‐Wells,Louise Berry,Tim Boswell,Amelia Joseph,Iona Willingham,Nichola Duckworth,Sarah Walsh,Emma Wise,Nathan Moore,Matilde Mori,Nick Cortes,Stephen Kidd,Rebecca Williams,Laura Gifford,Kelly Bicknell,Sarah Wyllie,Allyson Lloyd,Robert Impey,Cassandra Malone,Benjamin Cogger,Nick Levene,Lynn Monaghan,Alexander Keeley,Mohammad Raza,Cariad Evans,KATE JOHNSON,Irina Abnizova,Louise Aigrain,Mozam Ali,Laura Allen,Ralph Anderson,Siobhan Austin-Guest,Sendu Bala,Jeffrey Barrett,Kristina Battleday,James Beal,Sam Bellany,Tristram Bellerby,Katie Bellis,Duncan Berger,Matthew Berriman,Emma Betteridge,Paul Bevan,Simon Binley,Jason Bishop,Kirsty Blackburn,James Bonfield,Nick Boughton,Sam Bowker,Timothy Brendler-Spaeth,Iraad Bronner,Tanya Brooklyn,Sarah Buddenborg,Robert Bush,Catarina Caetano,Alex Cagan,Nicola Carter,Joanna Cartwright,Tiago Monteiro,Liz Chapman,Tracey-Jane Chillingworth,Peter Clapham,Richard Clark,Adrian Clarke,Catriona Clarke,Daryl Cole,Elizabeth Cook,Maria Coppola,Linda Cornell,Clare Cornwell,Craig Corton,Abby Crackett,Alison Cranage,Harriet Craven,Sarah Craw,Mark Crawford,Tim Cutts,Monika Dąbrowska,Matt Davies,Joseph Dawson,Callum Day,Aiden Densem,Thomas Dibling,Cat Dockree,D. Dodd,Sunil Dogga,Martin Dougherty,Alexander Dove,Lucy Drummond,Monika Dudek,Laura Durrant,Elizabeth Easthope,Sabine Eckert,Peter Ellis,Ben Farr,Michael Fenton,Marcella Ferrero,Neil Flack,Howerd Fordham,Grace Forsythe,Matt Francis,Audrey Fraser,Adam Freeman,Anastasia Galvin,Maria Garcia-Casado,Alex Gedny,James Glover,Scott Goodwin,Oliver Gould,Andy Gray,Emma Gray,Chris Griffiths,Yong Gu,Florence Guerin,Will Hamilton,Hannah Hanks,Alexandria Harrott,Edward Harry,Julia Harvison,Paul Heath,Anastasia Hernández-Koutoucheva,Rhiannon Hobbs,Dave Holland,Sarah Holmes,Gary Hornett,Nicholas Hough,Liz Huckle,Lena Hughes-Hallet,Adam Hunter,Stephen Inglis,Sameena Iqbal,Adam Jackson,Carlos Verdejo,Matthew Jones,Kalyan Kallepally,Keely Kay,Jon Keatley,Alan Keith,Alison King,Lucy Kitchin,Matt Kleanthous,Martina Klimekova,Ksenia Krasheninnkova,Greg Lane,Alan Irvine,Adam Laverack,Katharine Law,Stefanie Lensing,Amanah Lewis-Wade,Jennifer Liddle,Quan Lin,Sarah Lindsay,Sally Linsdell,Rhona Long,Jamie Lovell,Jon Lovell,James Mack,Mark Maddison,Aleksei Makunin,Irfan Mamun,Jenny Mansfield,Neil Marriott,Matt Martin,Matthew Mayho,Jo McClintock,Sandra McHugh,Liz McMinn,Carl Meadows,Emily Mobley,Maria Morra,Leanne Morrow,Kathryn Murie,Sian Nash,Claire Nathwani,Plamena Naydenova,Alexandra Neaverson,Ed Nerou,Jon Nicholson,Tabea Nimz,Guillaume Noell,Sarah O’Meara,Valeriu Ohan,Charles Olney,Doug Ormond,Ágnes Oszlánczi,Yoke Pang,Barbora Pardubska,Aaron Parmar,Gaurang Patel,Maggie Payne,Arabella Petersen,Deborah Plowman,Tom Preston,Christoph Puethe,Michael Quail,Diana Rajan,Richard Rance,Suzannah Rawlings,Nicholas Redshaw,Joe Reynolds,Mark Reynolds,Simon Rice,Matt Richardson,Connor Roberts,Katrina Robinson,Melanie Robinson,David Robinson,Hazel Rogers,Eduardo Rojo,Daljit Roopra,Mark Rose,Luke Rudd,Ramin Sadri,Nicholas Salmon,David Saul,Frank Schwach,Priit Palta,Phil Seekings,Lesley Shirley,Alison Simms,Matt Sinnott,Shanthi Sivadasan,Bart Siwek,Dale Sizer,Kenneth Skeldon,Jason Skelton,Joanna Slater-Tunstill,Lisa Sloper,Nathalie Smerdon,Chris Smith,Christen Smith,James Smith,Katie Smith,Michelle Smith,Sean Smith,Tina Smith,Leighton Sneade,C. Soria,Catarina Sousa,Emily Souster,Andrew Sparkes,Michael Spencer-Chapman,Janet Squares,Robert Stanley,Claire Steed,Tim Stickland,Ian Still,Mike Stratton,Michelle Strickland,Allen Swann,Agnieszka Świątkowska,Neil Sycamore,Emma Swift,Edward Symons,Suzanne Szluha,Emma Taluy,Nunu Tao,Katy Taylor,Sam Taylor,Stacey Thompson,Mark Thompson,M. Thomson,Nicholas Thomson,Scott Thurston,Dee Toombs,Benjamin Topping,Daniel Ungureanu,Thor Aspelund,Jana Urbanová,Philip Van,Valerie Vancollie,Paul Voak,Danielle Walker,Matthew Walker,Matt Waller,Gary Ward,Charlie Weatherhogg,Niki Webb,Alan Wells,Eloise Wells,Luke Westwood,Theo Whipp,Thomas Whiteley,Georgia Whitton,Andrew Whitwham,Sara Widaa,Mia Williams,Mark Wilson,Sean Wright,Alex Makunin,Michael Gallagher,Kathleen Williamson,Thomas Stanton,Michelle Michelsen,Joanna Warwick-Dugdale,Robin Manley,Audrey Farbos,James Harrison,Christine Sambles,David Studholme,Angie Lackenby,Tamyo Mbisa,Steven Platt,Shahjahan Miah,David Bibby,Carmen Manso,Jonathan Hubb,Gavin Dabrera,Mary Ramsay,Daniel Hawcutt,Ulf Schaefer,Natalie Groves,Eileen Gallagher,David Lee,David Williams,Nicholas Ellaby,Hassan Hartman,Nikos Manesis,Vineet Patel,Juan Ledesma,Katherine Twohig,Clare Pearson,Jeffrey Cheng,Hannah Bridgewater,Lucy Frost,Grace Taylor-Joyce,Paul Brown,L. Tong,Alice Broos,Daniel Mair,Jenna Nichols,Stephen Carmichael,Katherine Smollett,Kyriaki Nomikou,Elihú Aranday-Cortés,Natasha Johnson,Seema Nickbakhsh,Edith Vamos,Margaret Hughes,Lucille Rainbow,Richard Eccles,Charlotte Nelson,Mark Whitehead,Richard Gregory,Matthew Gemmell,Claudia Wierzbicki,Hermione Webster,Chloe Fisher,Adrian Signell,Gilberto Betancor,Harry Wilson,Gaia Nebbia,Alberto Cerda,Tammy Merrill,Rebekah Wilson,Marius Cotic,Nadua Bayzid,Thomas Thompson,Erwan Acheson,S. O’Brien,David Baker,Steven Rudder,Alp Aydin,Fei Sang,Johnny Debebe,Sarah François,Tetyana Vasylyeva,Marina Zamudio,Bernardo Gutiérrez,Angela Marchbank,Joshua Maksimovic,Karla Spellman,Kathryn McCluggage,Mari Morgan,Robert Beer,Safiah Afifi,Trudy Workman,William Fuller,Catherine Bresner,Adrienn Angyal,Luke Green,Paul Parsons,Rachel Tucker,Rebecca Brown,Jennifier Liddle,Igor Siveroni,Thanh Le-Viet,Rob Johnson,Katherine Sharrocks,Elizabeth Blane,Yorgo Modis,Kendra Leigh,John Briggs,Marit Gils,Kenneth Smith,John Bradley,Rainer Döffinger,Lourdes Ceron‐Gutierrez,Gabriela Barcenas‐Morales,David Pollock,Richard Goldstein,Anna Smielewska,Jordan Skittrall,Theodore Gouliouris,Ian Goodfellow,Effrossyni Gkrania‐Klotsas,Christopher Illingworth,Laura McCoy