Abstract Purpose To investigate if hip and knee alignment assessed 2 years after anterior cruciate ligament (ACL) injury is associated with compartment‐specific radiographic knee osteoarthritis (OA) 3 years later. Methods An exploratory analysis was conducted in the knee ACL, nonsurgical versus surgical treatment (KANON) trial (ISRCTN84752559); 115 subjects with acute ACL injury were assessed at the 2‐year follow‐up; full‐limb images of the injured leg were acquired, and the neck‐shaft angle (NSA) and hip‐knee‐ankle angle (HKA) were measured. At the 5‐year follow‐up, weight‐bearing tibiofemoral and patellofemoral radiographs were obtained. Radiographs were graded according to the OA Research Society International Atlas and Radiographic OA was defined as approximating Kellgren & Lawrence grade 2 or worse. Analysis of covariance adjusting for sex, age, body mass index, randomization and partial meniscectomy recorded at the 2‐year follow‐up was performed. Results In patients who had developed medial tibiofemoral OA at the 5‐year follow‐up, the NSA and the HKA at the 2‐year follow‐up were smaller (NSA, mean difference = −4.6° [95% confidence interval {CI} −7.9° to −1.1°]; HKA, mean difference = −2.3° [95% CI −4.2° to −0.4°]). No association was observed between the NSA or HKA at the 2‐year follow‐up and lateral tibiofemoral OA, nor patellofemoral OA at the 5‐year follow‐up. Conclusion A smaller NSA and HKA angle of the ACL injured leg (i.e., more varus hip and varus knee alignment) 2 years after the injury was associated with medial tibiofemoral radiographic OA 3 years later. Level of Evidence Level II exploratory post hoc analysis of an RCT.