Abstract The endoplasmic reticulum (ER) plays an important role in protein synthesis and its disruption can cause protein unfolding and misfolding. Accumulation of such proteins leads to ER stress, which ultimately promotes many diseases. Routine screening of ER activity in immune cells can flag serious conditions at early stages, but the current clinically used bio‐probes have limitations. Herein, an ER‐specific fluorophore based on a biocompatible benzothiadiazole‐imine cage (BTD‐cage) with excellent photophysical properties is developed. The cage outperforms commercially available ER stains in long‐term live cell imaging with no fading or photobleaching over time. The cage is responsive to different levels of ER stress where its fluorescence increases accordingly. Incorporating the bio‐probe into an immune disorder model, a 6‐, 21‐, and 48‐fold increase in intensity is shown in THP‐1, Raw 246.7, and Jurkat cells, respectively (within 15 min). These results strongly support that this system can be used for rapid visual and selective detection of ER stress. It is envisaged that tailoring molecular interactions and molecular recognition using supramolecular improved fluorophores can expand the library of biological probes for enhanced selectivity and targetability toward cellular organelles.